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Z-DNA

Overview of attention for book
Z-DNA
Springer US

Table of Contents

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    Book Overview
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    Chapter 1 The Origin of Left-Handed Poly[d(G-C)]
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    Chapter 2 Characterization of Z-DNA Using Circular Dichroism
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    Chapter 3 Characterization of Z-DNA by Infrared Spectroscopy
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    Chapter 4 Crystallization of Z-DNA in Complex with Chemical and Z-DNA Binding Z-Alpha Protein.
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    Chapter 5 NMR Titration Studies in Z-DNA Dynamics
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    Chapter 6 Single-Molecule Methods to Study Z-DNA Mechanics and Dynamics
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    Chapter 7 BZ Junctions and Its Application as Probe (2AP) to Detect Z-DNA Formation and Its Effector
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    Chapter 8 Oligonucleotide Containing 8-Trifluoromethyl-2′-Deoxyguanosine as a Z-DNA Probe
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    Chapter 9 Chiroptical Properties of Z-DNA Using Ionic Porphyrins and Metalloporphyrins
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    Chapter 10 Construction of a Z-DNA-Specific Recombinant Nuclease Zαα-FOK for Conformation Studies
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    Chapter 11 Human Heme Oxygenase-1 Promoter Activity Is Mediated by Z-DNA Formation
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    Chapter 12 ChIP-Seq Strategy to Identify Z-DNA-Forming Sequences in the Human Genome.
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    Chapter 13 Detection of Z-DNA Structures in Supercoiled Genome
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    Chapter 14 Thermogenomic Analysis of Left-Handed Z-DNA Propensities in Genomes
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    Chapter 15 DeepZ: A Deep Learning Approach for Z-DNA Prediction
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    Chapter 16 Methods to Study Z-DNA-Induced Genetic Instability
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    Chapter 17 Single-Molecule Visualization of B–Z Transition in DNA Origami Using High-Speed AFM
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    Chapter 18 Adoption of A–Z Junctions in RNAs by Binding of Zα Domains
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    Chapter 19 Detecting Z-RNA and Z-DNA in Mammalian Cells.
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    Chapter 20 Identification of ADAR1 p150 and p110 Associated Edit Sites
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    Chapter 21 Z-DNA and Z-RNA: Methods—Past and Future
Attention for Chapter 12: ChIP-Seq Strategy to Identify Z-DNA-Forming Sequences in the Human Genome.
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Chapter title
ChIP-Seq Strategy to Identify Z-DNA-Forming Sequences in the Human Genome.
Chapter number 12
Book title
Z-DNA
Published in
Methods in molecular biology, January 2023
DOI 10.1007/978-1-0716-3084-6_12
Pubmed ID
Book ISBNs
978-1-07-163083-9, 978-1-07-163084-6
Authors

Roh, Tae-Young

Abstract

Different from the canonical right-handed B-DNA, a left-handed Z-DNA forms an alternating syn- and anti-base conformations along the double-stranded helix under physiological conditions. Z-DNA structure plays a role in transcriptional regulation, chromatin remodeling, and genome stability. To understand the biological function of Z-DNA and map the genome-wide Z-DNA-forming sites (ZFSs), a ChIP-Seq strategy is applied, which is a combination of chromatin immunoprecipitation (ChIP) and high-throughput DNA sequencing analysis. Cross-linked chromatin is sheared and its fragments associated with Z-DNA-binding proteins are mapped onto the reference genome sequence. The global information of ZFSs positioning can provide a useful resource for better understanding of DNA structure-dependent biological mechanism.

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Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 09 March 2023.
All research outputs
#15,823,206
of 23,505,669 outputs
Outputs from Methods in molecular biology
#5,531
of 13,361 outputs
Outputs of similar age
#231,789
of 434,830 outputs
Outputs of similar age from Methods in molecular biology
#194
of 487 outputs
Altmetric has tracked 23,505,669 research outputs across all sources so far. This one is in the 22nd percentile – i.e., 22% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,361 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 43rd percentile – i.e., 43% of its peers scored the same or lower than it.
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We're also able to compare this research output to 487 others from the same source and published within six weeks on either side of this one. This one is in the 38th percentile – i.e., 38% of its contemporaries scored the same or lower than it.