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Rice transcriptome analysis to identify possible herbicide quinclorac detoxification genes

Overview of attention for article published in Frontiers in Genetics, September 2015
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Title
Rice transcriptome analysis to identify possible herbicide quinclorac detoxification genes
Published in
Frontiers in Genetics, September 2015
DOI 10.3389/fgene.2015.00306
Pubmed ID
Authors

Wenying Xu, Chao Di, Shaoxia Zhou, Jia Liu, Li Li, Fengxia Liu, Xinling Yang, Yun Ling, Zhen Su

Abstract

Quinclorac is a highly selective auxin-type herbicide and is widely used in the effective control of barnyard grass in paddy rice fields, improving the world's rice yield. The herbicide mode of action of quinclorac has been proposed, and hormone interactions affecting quinclorac signaling has been identified. Because of widespread use, quinclorac may be transported outside rice fields with the drainage waters, leading to soil and water pollution and other environmental health problems. In this study, we used 57K Affymetrix rice whole-genome array to identify quinclorac signaling response genes to study the molecular mechanisms of action and detoxification of quinclorac in rice plants. Overall, 637 probe sets were identified with differential expression levels under either 6 or 24 h of quinclorac treatment. Auxin-related genes such as GH3 and OsIAAs responded to quinclorac treatment. Gene Ontology analysis showed that genes of detoxification-related family genes were significantly enriched, including cytochrome P450, GST, UGT, and ABC and drug transporter genes. Moreover, real-time RT-PCR analysis showed that top candidate genes of P450 families such as CYP81, CYP709C, and CYP72A were universally induced by different herbicides. Some Arabidopsis genes of the same P450 family were up-regulated under quinclorac treatment. We conducted rice whole-genome GeneChip analysis and the first global identification of quinclorac response genes. This work may provide potential markers for detoxification of quinclorac and biomonitors of environmental chemical pollution.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 53 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 53 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 13 25%
Researcher 9 17%
Student > Master 6 11%
Student > Doctoral Student 5 9%
Student > Bachelor 3 6%
Other 8 15%
Unknown 9 17%
Readers by discipline Count As %
Agricultural and Biological Sciences 32 60%
Biochemistry, Genetics and Molecular Biology 7 13%
Chemistry 2 4%
Psychology 1 2%
Environmental Science 1 2%
Other 0 0%
Unknown 10 19%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 21 October 2015.
All research outputs
#14,238,817
of 22,829,083 outputs
Outputs from Frontiers in Genetics
#3,922
of 11,822 outputs
Outputs of similar age
#141,927
of 274,379 outputs
Outputs of similar age from Frontiers in Genetics
#30
of 60 outputs
Altmetric has tracked 22,829,083 research outputs across all sources so far. This one is in the 35th percentile – i.e., 35% of other outputs scored the same or lower than it.
So far Altmetric has tracked 11,822 research outputs from this source. They receive a mean Attention Score of 3.7. This one has gotten more attention than average, scoring higher than 62% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 274,379 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 45th percentile – i.e., 45% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 60 others from the same source and published within six weeks on either side of this one. This one is in the 41st percentile – i.e., 41% of its contemporaries scored the same or lower than it.