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Integration of expression data in genome-scale metabolic network reconstructions

Overview of attention for article published in Frontiers in Physiology, January 2012
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (86th percentile)
  • High Attention Score compared to outputs of the same age and source (85th percentile)

Mentioned by

blogs
1 blog
twitter
2 X users

Citations

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239 Dimensions

Readers on

mendeley
458 Mendeley
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5 CiteULike
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Title
Integration of expression data in genome-scale metabolic network reconstructions
Published in
Frontiers in Physiology, January 2012
DOI 10.3389/fphys.2012.00299
Pubmed ID
Authors

Anna S. Blazier, Jason A. Papin

Abstract

With the advent of high-throughput technologies, the field of systems biology has amassed an abundance of "omics" data, quantifying thousands of cellular components across a variety of scales, ranging from mRNA transcript levels to metabolite quantities. Methods are needed to not only integrate this omics data but to also use this data to heighten the predictive capabilities of computational models. Several recent studies have successfully demonstrated how flux balance analysis (FBA), a constraint-based modeling approach, can be used to integrate transcriptomic data into genome-scale metabolic network reconstructions to generate predictive computational models. In this review, we summarize such FBA-based methods for integrating expression data into genome-scale metabolic network reconstructions, highlighting their advantages as well as their limitations.

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X Demographics

The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 458 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 14 3%
Colombia 2 <1%
Germany 2 <1%
Sweden 2 <1%
Luxembourg 2 <1%
Iran, Islamic Republic of 2 <1%
Latvia 1 <1%
Australia 1 <1%
Netherlands 1 <1%
Other 8 2%
Unknown 423 92%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 136 30%
Student > Master 78 17%
Researcher 73 16%
Student > Doctoral Student 24 5%
Professor > Associate Professor 22 5%
Other 68 15%
Unknown 57 12%
Readers by discipline Count As %
Agricultural and Biological Sciences 162 35%
Biochemistry, Genetics and Molecular Biology 83 18%
Engineering 52 11%
Computer Science 41 9%
Chemical Engineering 15 3%
Other 41 9%
Unknown 64 14%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 8. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 24 August 2014.
All research outputs
#3,914,538
of 22,675,759 outputs
Outputs from Frontiers in Physiology
#1,971
of 13,467 outputs
Outputs of similar age
#33,673
of 244,088 outputs
Outputs of similar age from Frontiers in Physiology
#45
of 309 outputs
Altmetric has tracked 22,675,759 research outputs across all sources so far. Compared to these this one has done well and is in the 82nd percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 13,467 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 7.5. This one has done well, scoring higher than 85% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 244,088 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 86% of its contemporaries.
We're also able to compare this research output to 309 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 85% of its contemporaries.