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X Demographics
Mendeley readers
Attention Score in Context
| Title |
Deciphering the conserved genetic loci implicated in plant disease control through comparative genomics of Bacillus amyloliquefaciens subsp. plantarum
|
|---|---|
| Published in |
Frontiers in Plant Science, August 2015
|
| DOI | 10.3389/fpls.2015.00631 |
| Pubmed ID | |
| Authors |
Mohammad J. Hossain, Chao Ran, Ke Liu, Choong-Min Ryu, Cody R. Rasmussen-Ivey, Malachi A. Williams, Mohammad K. Hassan, Soo-Keun Choi, Haeyoung Jeong, Molli Newman, Joseph W. Kloepper, Mark R. Liles |
| Abstract |
To understand the growth-promoting and disease-inhibiting activities of plant growth-promoting rhizobacteria (PGPR) strains, the genomes of 12 Bacillus subtilis group strains with PGPR activity were sequenced and analyzed. These B. subtilis strains exhibited high genomic diversity, whereas the genomes of B. amyloliquefaciens strains (a member of the B. subtilis group) are highly conserved. A pairwise BLASTp matrix revealed that gene family similarity among Bacillus genomes ranges from 32 to 90%, with 2839 genes within the core genome of B. amyloliquefaciens subsp. plantarum. Comparative genomic analyses of B. amyloliquefaciens strains identified genes that are linked with biological control and colonization of roots and/or leaves, including 73 genes uniquely associated with subsp. plantarum strains that have predicted functions related to signaling, transportation, secondary metabolite production, and carbon source utilization. Although B. amyloliquefaciens subsp. plantarum strains contain gene clusters that encode many different secondary metabolites, only polyketide biosynthetic clusters that encode difficidin and macrolactin are conserved within this subspecies. To evaluate their role in plant pathogen biocontrol, genes involved in secondary metabolite biosynthesis were deleted in a B. amyloliquefaciens subsp. plantarum strain, revealing that difficidin expression is critical in reducing the severity of disease, caused by Xanthomonas axonopodis pv. vesicatoria in tomato plants. This study defines genomic features of PGPR strains and links them with biocontrol activity and with host colonization. |
X Demographics
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Unknown | 3 | 100% |
Demographic breakdown
| Type | Count | As % |
|---|---|---|
| Members of the public | 3 | 100% |
Mendeley readers
The data shown below were compiled from readership statistics for 82 Mendeley readers of this research output. Click here to see the associated Mendeley record.
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Uganda | 1 | 1% |
| France | 1 | 1% |
| Brazil | 1 | 1% |
| Mexico | 1 | 1% |
| Korea, Republic of | 1 | 1% |
| Unknown | 77 | 94% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Researcher | 20 | 24% |
| Student > Master | 13 | 16% |
| Student > Ph. D. Student | 12 | 15% |
| Student > Doctoral Student | 5 | 6% |
| Student > Bachelor | 4 | 5% |
| Other | 7 | 9% |
| Unknown | 21 | 26% |
| Readers by discipline | Count | As % |
|---|---|---|
| Agricultural and Biological Sciences | 35 | 43% |
| Biochemistry, Genetics and Molecular Biology | 13 | 16% |
| Environmental Science | 6 | 7% |
| Immunology and Microbiology | 3 | 4% |
| Social Sciences | 1 | 1% |
| Other | 2 | 2% |
| Unknown | 22 | 27% |
Attention Score in Context
This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 09 September 2015.
All research outputs
#18,904,536
of 24,086,622 outputs
Outputs from Frontiers in Plant Science
#13,326
of 22,495 outputs
Outputs of similar age
#183,755
of 270,291 outputs
Outputs of similar age from Frontiers in Plant Science
#175
of 304 outputs
Altmetric has tracked 24,086,622 research outputs across all sources so far. This one is in the 18th percentile – i.e., 18% of other outputs scored the same or lower than it.
So far Altmetric has tracked 22,495 research outputs from this source. They receive a mean Attention Score of 3.9. This one is in the 31st percentile – i.e., 31% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 270,291 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 27th percentile – i.e., 27% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 304 others from the same source and published within six weeks on either side of this one. This one is in the 38th percentile – i.e., 38% of its contemporaries scored the same or lower than it.