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Genome-Wide Association Study Reveals Novel Loci for SC7 Resistance in a Soybean Mutant Panel

Overview of attention for article published in Frontiers in Plant Science, October 2017
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  • Above-average Attention Score compared to outputs of the same age and source (58th percentile)

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Title
Genome-Wide Association Study Reveals Novel Loci for SC7 Resistance in a Soybean Mutant Panel
Published in
Frontiers in Plant Science, October 2017
DOI 10.3389/fpls.2017.01771
Pubmed ID
Authors

Zhijun Che, Hailun Liu, Fanglei Yi, Hao Cheng, Yuming Yang, Li Wang, Jingyi Du, Peipei Zhang, Jiao Wang, Deyue Yu

Abstract

Soybean mosaic virus (SMV) is a member of Potyvirus genus that causes severe yield loss and destroys seed quality in soybean [Glycine max (L.) Merr.]. It is important to explore new resistance sources and discover new resistance loci to SMV, which will provide insights to improve breeding strategies for SMV resistance. Here, a genome-wide association study was conducted to accelerate molecular breeding for the improvement of resistance to SMV in soybean. A population of 165 soybean mutants derived from two soybean parents was used in this study. There were 104 SNPs identified significantly associated with resistance to SC7, some of which were located within previous reported quantitative trait loci. Three putative genes on chromosome 1, 9, and 12 were homologous to WRKY72, eEF1Bβ, and RLP9, which were involved in defense response to insect and disease in Arabidopsis. Moreover, the expression levels of these three genes changed in resistance and susceptible soybean accessions after SMV infection. These three putative genes may involve in the resistance to SC7 and be worthy to further research. Collectively, markers significantly associated with resistance to SC7 will be helpful in molecular marker-assisted selection for breeding resistant soybean accessions to SMV, and the candidate genes identified would advance the functional study of resistance to SMV in soybean.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 23 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 23 100%

Demographic breakdown

Readers by professional status Count As %
Student > Doctoral Student 3 13%
Student > Master 3 13%
Researcher 3 13%
Student > Ph. D. Student 3 13%
Other 2 9%
Other 4 17%
Unknown 5 22%
Readers by discipline Count As %
Agricultural and Biological Sciences 9 39%
Biochemistry, Genetics and Molecular Biology 4 17%
Unspecified 1 4%
Computer Science 1 4%
Veterinary Science and Veterinary Medicine 1 4%
Other 0 0%
Unknown 7 30%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 16 November 2017.
All research outputs
#13,572,275
of 23,006,268 outputs
Outputs from Frontiers in Plant Science
#6,738
of 20,507 outputs
Outputs of similar age
#163,939
of 324,708 outputs
Outputs of similar age from Frontiers in Plant Science
#188
of 477 outputs
Altmetric has tracked 23,006,268 research outputs across all sources so far. This one is in the 39th percentile – i.e., 39% of other outputs scored the same or lower than it.
So far Altmetric has tracked 20,507 research outputs from this source. They receive a mean Attention Score of 4.0. This one has gotten more attention than average, scoring higher than 64% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 324,708 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 47th percentile – i.e., 47% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 477 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 58% of its contemporaries.