Title |
A Practical Guide to Visualization and Statistical Analysis of R. solanacearum Infection Data Using R
|
---|---|
Published in |
Frontiers in Plant Science, April 2017
|
DOI | 10.3389/fpls.2017.00623 |
Pubmed ID | |
Authors |
Niklas Schandry |
Abstract |
This paper describes and summarizes approaches for visualization and statistical analysis using data from Ralstonia solanacearum infection experiments based on methods and concepts that are broadly applicable. Members of the R. solanacearum species complex cause bacterial wilt disease. Bacterial wilt is a lethal plant disease and has been studied for over 100 years. During this time various methods to quantify disease and different ways to analyze the generated data have been employed. Here, I aim to provide a general background on three distinct and commonly used measures of disease: the area under the disease progression curve, longitudinal recordings of disease severity and host survival. I will discuss how one can proceed with visualization, statistical analysis, and interpretation using different datasets while revisiting the general concepts of statistical analysis. Datasets and R code to perform all analyses discussed here are included in the supplement. |
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United States | 10 | 23% |
India | 3 | 7% |
Hong Kong | 1 | 2% |
Curaçao | 1 | 2% |
Finland | 1 | 2% |
Pakistan | 1 | 2% |
Brazil | 1 | 2% |
United Kingdom | 1 | 2% |
Bolivia, Plurinational State of | 1 | 2% |
Other | 1 | 2% |
Unknown | 22 | 51% |
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Members of the public | 25 | 58% |
Scientists | 18 | 42% |
Mendeley readers
Geographical breakdown
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Unknown | 104 | 100% |
Demographic breakdown
Readers by professional status | Count | As % |
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Student > Ph. D. Student | 19 | 18% |
Student > Master | 16 | 15% |
Researcher | 13 | 13% |
Student > Doctoral Student | 10 | 10% |
Student > Bachelor | 7 | 7% |
Other | 14 | 13% |
Unknown | 25 | 24% |
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Biochemistry, Genetics and Molecular Biology | 8 | 8% |
Environmental Science | 4 | 4% |
Immunology and Microbiology | 3 | 3% |
Business, Management and Accounting | 2 | 2% |
Other | 8 | 8% |
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