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Algorithms for the analysis of ensemble neural spiking activity using simultaneous-event multivariate point-process models

Overview of attention for article published in Frontiers in Computational Neuroscience, January 2014
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  • High Attention Score compared to outputs of the same age and source (81st percentile)

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Title
Algorithms for the analysis of ensemble neural spiking activity using simultaneous-event multivariate point-process models
Published in
Frontiers in Computational Neuroscience, January 2014
DOI 10.3389/fncom.2014.00006
Pubmed ID
Authors

Demba Ba, Simona Temereanca, Emery N. Brown

Abstract

Understanding how ensembles of neurons represent and transmit information in the patterns of their joint spiking activity is a fundamental question in computational neuroscience. At present, analyses of spiking activity from neuronal ensembles are limited because multivariate point process (MPP) models cannot represent simultaneous occurrences of spike events at an arbitrarily small time resolution. Solo recently reported a simultaneous-event multivariate point process (SEMPP) model to correct this key limitation. In this paper, we show how Solo's discrete-time formulation of the SEMPP model can be efficiently fit to ensemble neural spiking activity using a multinomial generalized linear model (mGLM). Unlike existing approximate procedures for fitting the discrete-time SEMPP model, the mGLM is an exact algorithm. The MPP time-rescaling theorem can be used to assess model goodness-of-fit. We also derive a new marked point-process (MkPP) representation of the SEMPP model that leads to new thinning and time-rescaling algorithms for simulating an SEMPP stochastic process. These algorithms are much simpler than multivariate extensions of algorithms for simulating a univariate point process, and could not be arrived at without the MkPP representation. We illustrate the versatility of the SEMPP model by analyzing neural spiking activity from pairs of simultaneously-recorded rat thalamic neurons stimulated by periodic whisker deflections, and by simulating SEMPP data. In the data analysis example, the SEMPP model demonstrates that whisker motion significantly modulates simultaneous spiking activity at the 1 ms time scale and that the stimulus effect is more than one order of magnitude greater for simultaneous activity compared with non-simultaneous activity. Together, the mGLM, the MPP time-rescaling theorem and the MkPP representation of the SEMPP model offer a theoretically sound, practical tool for measuring joint spiking propensity in a neuronal ensemble.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 70 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 2 3%
Switzerland 1 1%
Brazil 1 1%
Unknown 66 94%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 19 27%
Researcher 15 21%
Student > Master 10 14%
Student > Bachelor 7 10%
Student > Doctoral Student 5 7%
Other 9 13%
Unknown 5 7%
Readers by discipline Count As %
Engineering 19 27%
Agricultural and Biological Sciences 12 17%
Computer Science 10 14%
Neuroscience 9 13%
Medicine and Dentistry 6 9%
Other 8 11%
Unknown 6 9%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 5. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 14 April 2014.
All research outputs
#6,118,065
of 22,751,628 outputs
Outputs from Frontiers in Computational Neuroscience
#297
of 1,338 outputs
Outputs of similar age
#72,111
of 305,229 outputs
Outputs of similar age from Frontiers in Computational Neuroscience
#3
of 16 outputs
Altmetric has tracked 22,751,628 research outputs across all sources so far. This one has received more attention than most of these and is in the 73rd percentile.
So far Altmetric has tracked 1,338 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 6.2. This one has done well, scoring higher than 77% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 305,229 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 76% of its contemporaries.
We're also able to compare this research output to 16 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 81% of its contemporaries.